{ "_id": "6a1ef670b401979e7341727f", "Package": "bnpsd", "Title": "Simulate Genotypes from the BN-PSD Admixture Model", "Version": "1.3.14.9000", "Authors@R": "c(\nperson(given = \"Alejandro\",\nfamily = \"Ochoa\",\nrole = c(\"aut\", \"cre\"),\nemail = \"alejandro.ochoa@duke.edu\",\ncomment = c(ORCID = \"0000-0003-4928-3403\")),\nperson(given = \"John D.\",\nfamily = \"Storey\",\nrole = c(\"aut\"),\nemail = \"jstorey@princeton.edu\",\ncomment = c(ORCID = \"0000-0001-5992-402X\"))\n)", "Description": "The Pritchard-Stephens-Donnelly (PSD) admixture model has\nk intermediate subpopulations from which n individuals draw\ntheir alleles dictated by their individual-specific admixture\nproportions. The BN-PSD model additionally imposes the\nBalding-Nichols (BN) allele frequency model to the intermediate\npopulations, which therefore evolved independently from a\ncommon ancestral population T with subpopulation-specific FST\n(Wright's fixation index) parameters. The BN-PSD model can be\nused to yield complex population structures. This simulation\napproach is now extended to subpopulations related by a tree.\nMethod described in Ochoa and Storey (2021)\n.", "License": "GPL (>= 3)", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.2.3", "VignetteBuilder": "knitr", "URL": "https://github.com/StoreyLab/bnpsd/", "BugReports": "https://github.com/StoreyLab/bnpsd/issues", "Repository": "https://storeylab.r-universe.dev", "Date/Publication": "2023-07-21 19:29:42 UTC", "RemoteUrl": "https://github.com/storeylab/bnpsd", "RemoteRef": "HEAD", "RemoteSha": "c101b07810bfdddab10b99322cf688821414ff31", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-19 06:34:48 UTC", "User": "root" }, "Author": "Alejandro Ochoa [aut, cre] (ORCID:\n),\nJohn D. Storey [aut] (ORCID: )", "Maintainer": "Alejandro Ochoa ", "MD5sum": "b88b57d4f5989ccf6c6e27edecae7c58", "_user": "storeylab", "_type": "src", "_file": "bnpsd_1.3.14.9000.tar.gz", "_fileid": "15afc891996d9b8d39684c56eebf0600dcf9a51a6ee1079905ea192ee583e61d", "_filesize": 894170, "_sha256": "15afc891996d9b8d39684c56eebf0600dcf9a51a6ee1079905ea192ee583e61d", "_created": "2026-05-19T06:34:48.000Z", "_published": "2026-06-02T15:27:44.662Z", "_distro": "noble", "_jobs": [ { "job": 79107870889, "time": 131, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7076491474" }, { "job": 79107870819, "time": 126, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7076490185" }, { "job": 79107870940, "time": 360, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7076508890" }, { "job": 79107871300, "time": 191, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7076497341" }, { "job": 79107870063, "time": 174, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7076457023" }, { "job": 79107869558, "time": 127, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7362229720" }, { "job": 79107870359, "time": 92, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7076481290" }, { "job": 79107871088, "time": 75, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7076477134" }, { "job": 79107871423, "time": 85, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7076480389" } ], "_buildurl": "https://github.com/r-universe/storeylab/actions/runs/26080491893", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/storeylab/bnpsd", "_commit": { "id": "c101b07810bfdddab10b99322cf688821414ff31", "author": "Alejandro Ochoa Garcia ", "committer": "Alejandro Ochoa Garcia ", "message": "Added function `draw_all_unstructured`; cleaned up testing code by writing generic testing functions for Q, X, and AF matrices\n", "time": 1689967782 }, "_maintainer": { "name": "Alejandro Ochoa", "email": "alejandro.ochoa@duke.edu", "login": "alexviiia", "orcid": "0000-0003-4928-3403", "description": "Statistical geneticist, computational biologist. Well-rounded nerd, also love languages and music.", "uuid": 12603341 }, "_registered": true, "_dependencies": [ { "package": "stats", "role": "Imports" }, { "package": "ape", "role": "Imports" }, { "package": "nnls", "role": "Imports" }, { "package": "popkin", "version": ">= 1.3.9", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "RColorBrewer", "role": "Suggests" } ], "_owner": "storeylab", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 8, "_contributors": [ { "user": "alexviiia", "count": 104, "uuid": 12603341 } ], "_userbio": { "uuid": 8007641, "type": "organization", "name": "Storey Lab", "description": "Storey Lab at Princeton University" }, "_downloads": { "count": 310, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/bnpsd" }, "_mentions": 2, "_devurl": "https://github.com/storeylab/bnpsd", "_searchresults": 41, 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