Package: bnpsd
Title: Simulate Genotypes from the BN-PSD Admixture Model
Version: 1.3.14.9000
Authors@R: c(
    person(given = "Alejandro",
	   family = "Ochoa",
	   role = c("aut", "cre"),
	   email = "alejandro.ochoa@duke.edu",
           comment = c(ORCID = "0000-0003-4928-3403")),
    person(given = "John D.",
           family = "Storey",
	   role = c("aut"),
	   email = "jstorey@princeton.edu",
           comment = c(ORCID = "0000-0001-5992-402X"))
    )
Description: The Pritchard-Stephens-Donnelly (PSD) admixture model has
        k intermediate subpopulations from which n individuals draw
        their alleles dictated by their individual-specific admixture
        proportions.  The BN-PSD model additionally imposes the
        Balding-Nichols (BN) allele frequency model to the intermediate
        populations, which therefore evolved independently from a
        common ancestral population T with subpopulation-specific FST
        (Wright's fixation index) parameters.  The BN-PSD model can be
        used to yield complex population structures.  This simulation
        approach is now extended to subpopulations related by a tree.
        Method described in Ochoa and Storey (2021)
        <doi:10.1371/journal.pgen.1009241>.
Depends:
Imports: stats, ape, nnls
Suggests: popkin (>= 1.3.9), testthat, knitr, rmarkdown, RColorBrewer
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
VignetteBuilder: knitr
URL: https://github.com/StoreyLab/bnpsd/
BugReports: https://github.com/StoreyLab/bnpsd/issues
Repository: https://storeylab.r-universe.dev
Date/Publication: 2023-07-21 19:29:42 UTC
RemoteUrl: https://github.com/storeylab/bnpsd
RemoteRef: HEAD
RemoteSha: c101b07810bfdddab10b99322cf688821414ff31
NeedsCompilation: no
Packaged: 2026-06-19 06:44:41 UTC; root
Author: Alejandro Ochoa [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-4928-3403>),
  John D. Storey [aut] (ORCID: <https://orcid.org/0000-0001-5992-402X>)
Maintainer: Alejandro Ochoa <alejandro.ochoa@duke.edu>